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KMID : 0613820040140060991
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Journal of Life Science
2004 Volume.14 No. 6 p.991 ~ p.996
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Development of Integrated System for Motif and Domain Search
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Jung Min-Chul
Park Wan
Kim Ki-Bong
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Abstract
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This paper deals with an integrated system that facilitates researchers to do motif and domain search effectively and systematically. The system we developed is constructed on the basis of the integration of various resources related to motif, domain, and protein family. Those resources that can be classified into databases and search programs are dispersed to be available in Internet. In order to develop this system, we extracted core contents of diverse databases, which are required to analyze the protein function in terms of motifs or domains, to construct local databases and installed motif or domain search programs on our server, which corresponding database has as its own search program. Diverse utilities and CGI (Common Gateway Interface) programs make the databases and the search programs interlocked and web-based graphical user interfaces integrate all the components of our system. Employing our integrated system, end-users can receive its one-stop service to do protein function analysis systematically and effectively, without surfing many sites in Internet and wasting time over integrating search results.
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KEYWORD
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Integrated system, motif, domain, local database, one-stop service, protein function analysis
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